Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

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Gene Expression (GO:0010467) Genes Targeted by hsa-mir-548b-5p in MPM Mesothelioma Gordon Cluster 63 Table contains all genes in the MPM Mesothelioma Gordon cluster number 63. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-548b-5p GO:0010467 5929 RBBP5 retinoblastoma binding protein 5 [Source:HGNC Symbol;Acc:9888] zzz999 Yes 4774 NFIA nuclear factor I/A [Source:HGNC Symbol;Acc:7784] zzz999 Yes 10134 BCAP31 B-cell receptor-associated protein 31 [Source:HGNC Symbol;Acc:16695] zzz999 79618 HMBOX1 homeobox containing 1 [Source:HGNC Symbol;Acc:26137] zzz999 Yes 9716 AQR aquarius homolog (mouse) [Source:HGNC Symbol;Acc:29513] zzz999 Yes 23536 ADAT1 adenosine deaminase, tRNA-specific 1 [Source:HGNC Symbol;Acc:228] zzz999 Yes 5087 PBX1 pre-B-cell leukemia homeobox 1 [Source:HGNC Symbol;Acc:8632] zzz999 Yes 55252 ASXL2 additional sex combs like 2 (Drosophila) [Source:HGNC Symbol;Acc:23805] P Yes 51768 TM7SF3 transmembrane 7 superfamily member 3 [Source:HGNC Symbol;Acc:23049] zzz999 133619 PRRC1 proline-rich coiled-coil 1 [Source:HGNC Symbol;Acc:28164] zzz999 27044 SND1 staphylococcal nuclease and tudor domain containing 1 [Source:HGNC Symbol;Acc:30646] zzz999 Yes 25909 AHCTF1 AT hook containing transcription factor 1 [Source:HGNC Symbol;Acc:24618] P Yes 2564 GABRE gamma-aminobutyric acid (GABA) A receptor, epsilon [Source:HGNC Symbol;Acc:4085] zzz999 51154 MRTO4 mRNA turnover 4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:18477] zzz999 84619 ZGPAT zinc finger, CCCH-type with G patch domain [Source:HGNC Symbol;Acc:15948] zzz999 Yes 23215 PRRC2C proline-rich coiled-coil 2C [Source:HGNC Symbol;Acc:24903] zzz999 3842 TNPO1 transportin 1 [Source:HGNC Symbol;Acc:6401] P T 2568 GABRP gamma-aminobutyric acid (GABA) A receptor, pi [Source:HGNC Symbol;Acc:4089] zzz999 25782 RAB3GAP2 RAB3 GTPase activating protein subunit 2 (non-catalytic) [Source:HGNC Symbol;Acc:17168] zzz999 51111 SUV420H1 suppressor of variegation 4-20 homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:24283] zzz999 Yes 10157 AASS aminoadipate-semialdehyde synthase [Source:HGNC Symbol;Acc:17366] zzz999 8294 HIST2H4B histone cluster 2, H4b [Source:HGNC Symbol;Acc:29607] zzz999 51575 ESF1 ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:15898] zzz999 Yes 6925 TCF4 transcription factor 4 [Source:HGNC Symbol;Acc:11634] P Yes 10087 COL4A3BP collagen, type IV, alpha 3 (Goodpasture antigen) binding protein [Source:HGNC Symbol;Acc:2205] zzz999 55667 DENND4C DENN/MADD domain containing 4C [Source:HGNC Symbol;Acc:26079] zzz999 151987 PPP4R2 protein phosphatase 4, regulatory subunit 2 [Source:HGNC Symbol;Acc:18296] zzz999 Yes 55127 HEATR1 HEAT repeat containing 1 [Source:HGNC Symbol;Acc:25517] P Yes 124801 LSM12 LSM12 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:26407] zzz999 5395 PMS2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae) [Source:HGNC Symbol;Acc:9122] zzz999 7644 ZNF91 zinc finger protein 91 [Source:HGNC Symbol;Acc:13166] zzz999 Yes 29896 TRA2A transformer 2 alpha homolog (Drosophila) [Source:HGNC Symbol;Acc:16645] zzz999 Yes 9141 PDCD5 programmed cell death 5 [Source:HGNC Symbol;Acc:8764] P 55285 RBM41 RNA binding motif protein 41 [Source:HGNC Symbol;Acc:25617] zzz999 23528 ZNF281 zinc finger protein 281 [Source:HGNC Symbol;Acc:13075] zzz999 Yes 79776 ZFHX4 zinc finger homeobox 4 [Source:HGNC Symbol;Acc:30939] zzz999 Yes 50848 F11R F11 receptor [Source:HGNC Symbol;Acc:14685] zzz999 30001 ERO1L ERO1-like (S. cerevisiae) [Source:HGNC Symbol;Acc:13280] zzz999 79939 SLC35E1 solute carrier family 35, member E1 [Source:HGNC Symbol;Acc:20803] zzz999 29083 GTPBP8 GTP-binding protein 8 (putative) [Source:HGNC Symbol;Acc:25007] zzz999 2186 BPTF bromodomain PHD finger transcription factor [Source:HGNC Symbol;Acc:3581] P Yes 11214 AKAP13 A kinase (PRKA) anchor protein 13 [Source:HGNC Symbol;Acc:371] zzz999 9122 SLC16A4 solute carrier family 16, member 4 (monocarboxylic acid transporter 5) [Source:HGNC Symbol;Acc:10925] zzz999 11011 TLK2 tousled-like kinase 2 [Source:HGNC Symbol;Acc:11842] zzz999 7150 TOP1 topoisomerase (DNA) I [Source:HGNC Symbol;Acc:11986] zzz999 27252 KLHL20 kelch-like 20 (Drosophila) [Source:HGNC Symbol;Acc:25056] T 6259 RYK RYK receptor-like tyrosine kinase [Source:HGNC Symbol;Acc:10481] P 6314 ATXN7 ataxin 7 [Source:HGNC Symbol;Acc:10560] zzz999 Yes 8339 HIST1H2BI histone cluster 1, H2bi [Source:HGNC Symbol;Acc:4756] zzz999 23304 UBR2 ubiquitin protein ligase E3 component n-recognin 2 [Source:HGNC Symbol;Acc:21289] zzz999 9014 TAF1B TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa [Source:HGNC Symbol;Acc:11533] zzz999 Yes 51449 PCYOX1 prenylcysteine oxidase 1 [Source:HGNC Symbol;Acc:20588] zzz999 9859 CEP170 centrosomal protein 170kDa [Source:HGNC Symbol;Acc:28920] zzz999 55705 IPO9 importin 9 [Source:HGNC Symbol;Acc:19425] T 1739 DLG1 discs, large homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:2900] zzz999 10793 ZNF273 zinc finger protein 273 [Source:HGNC Symbol;Acc:13067] zzz999 Yes 3283 HSD3B1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 [Source:HGNC Symbol;Acc:5217] zzz999 11103 KRR1 KRR1, small subunit (SSU) processome component, homolog (yeast) [Source:HGNC Symbol;Acc:5176] zzz999 Yes 55785 FGD6 FYVE, RhoGEF and PH domain containing 6 [Source:HGNC Symbol;Acc:21740] zzz999 6526 SLC5A3 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 [Source:HGNC Symbol;Acc:11038] P T 57226 LYRM2 LYR motif containing 2 [Source:HGNC Symbol;Acc:25229] zzz999 6738 TROVE2 TROVE domain family, member 2 [Source:HGNC Symbol;Acc:11313] P Yes 10659 CELF2 CUGBP, Elav-like family member 2 [Source:HGNC Symbol;Acc:2550] zzz999 Yes 92140 MTDH metadherin [Source:HGNC Symbol;Acc:29608] P Yes 57798 GATAD1 GATA zinc finger domain containing 1 [Source:HGNC Symbol;Acc:29941] P Yes 5532 PPP3CB protein phosphatase 3, catalytic subunit, beta isozyme [Source:HGNC Symbol;Acc:9315] P 29123 ANKRD11 ankyrin repeat domain 11 [Source:HGNC Symbol;Acc:21316] zzz999 580 BARD1 BRCA1 associated RING domain 1 [Source:HGNC Symbol;Acc:952] zzz999 Yes 9686 VGLL4 vestigial like 4 (Drosophila) [Source:HGNC Symbol;Acc:28966] zzz999 Yes 80264 ZNF430 zinc finger protein 430 [Source:HGNC Symbol;Acc:20808] zzz999 Yes 905 CCNT2 cyclin T2 [Source:HGNC Symbol;Acc:1600] P Yes 160140 C11orf65 chromosome 11 open reading frame 65 [Source:HGNC Symbol;Acc:28519] zzz999 5607 MAP2K5 mitogen-activated protein kinase kinase 5 [Source:HGNC Symbol;Acc:6845] zzz999 11165 NUDT3 nudix (nucleoside diphosphate linked moiety X)-type motif 3 [Source:HGNC Symbol;Acc:8050] zzz999 51029 PPPDE1 PPPDE peptidase domain containing 1 [Source:HGNC Symbol;Acc:24264] zzz999 27246 RNF115 ring finger protein 115 [Source:HGNC Symbol;Acc:18154] zzz999 22834 ZNF652 zinc finger protein 652 [Source:HGNC Symbol;Acc:29147] zzz999 Yes 5930 RBBP6 retinoblastoma binding protein 6 [Source:HGNC Symbol;Acc:9889] zzz999 9169 SCAF11 SR-related CTD-associated factor 11 [Source:HGNC Symbol;Acc:10784] zzz999 Yes 8554 PIAS1 protein inhibitor of activated STAT, 1 [Source:HGNC Symbol;Acc:2752] P Yes 664 BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 [Source:HGNC Symbol;Acc:1084] zzz999 Yes 64421 DCLRE1C DNA cross-link repair 1C [Source:HGNC Symbol;Acc:17642] zzz999 8394 PIP5K1A phosphatidylinositol-4-phosphate 5-kinase, type I, alpha [Source:HGNC Symbol;Acc:8994] zzz999 6774 STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) [Source:HGNC Symbol;Acc:11364] zzz999 Yes 51107 APH1A anterior pharynx defective 1 homolog A (C. elegans) [Source:HGNC Symbol;Acc:29509] zzz999 Yes 1917 EEF1A2 eukaryotic translation elongation factor 1 alpha 2 [Source:HGNC Symbol;Acc:3192] zzz999 7095 SEC62 SEC62 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:11846] zzz999 79088 ZNF426 zinc finger protein 426 [Source:HGNC Symbol;Acc:20725] zzz999 Yes 23253 ANKRD12 ankyrin repeat domain 12 [Source:HGNC Symbol;Acc:29135] zzz999 54878 DPP8 dipeptidyl-peptidase 8 [Source:HGNC Symbol;Acc:16490] P 5033 P4HA1 prolyl 4-hydroxylase, alpha polypeptide I [Source:HGNC Symbol;Acc:8546] P 1719 DHFR dihydrofolate reductase [Source:HGNC Symbol;Acc:2861] zzz999 9733 SART3 squamous cell carcinoma antigen recognized by T cells 3 [Source:HGNC Symbol;Acc:16860] zzz999 Yes 8826 IQGAP1 IQ motif containing GTPase activating protein 1 [Source:HGNC Symbol;Acc:6110] zzz999 51701 NLK nemo-like kinase [Source:HGNC Symbol;Acc:29858] P Yes 9736 USP34 ubiquitin specific peptidase 34 [Source:HGNC Symbol;Acc:20066] zzz999 26118 WSB1 WD repeat and SOCS box containing 1 [Source:HGNC Symbol;Acc:19221] zzz999 7559 ZNF12 zinc finger protein 12 [Source:HGNC Symbol;Acc:12902] zzz999 Yes 9931 HELZ helicase with zinc finger [Source:HGNC Symbol;Acc:16878] P 4097 MAFG v-maf musculoaponeurotic fibrosarcoma oncogene homolog G (avian) [Source:HGNC Symbol;Acc:6781] P Yes

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